Transcription Factor
| Accessions: | Q9FFH3 (JASPAR 2024), T24145 (AthalianaCistrome v4_May2016) |
| Names: | IDD8_ARATH, Protein indeterminate-domain 8, Zinc finger protein NUTCRACKER, AT5G44160, NUC, T24145; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
| Length: | 466 |
| Sequence: (in bold interface residues) | 1 MTSEVLQTISSGSGFAQPQSSSTLDHDESLINPPLVKKKRNLPGNPDPEAEVIALSPTTL 60 61 MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSS 120 121 RALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 180 181 DSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQYLMGTFIPPLQPFVPQP 240 241 QTNPNHHHQHFQPPTSSSLSLWMGQDIAPPQPQPDYDWVFGNAKAASACIDNNNTHDEQI 300 301 TQNANASLTTTTTLSAPSLFSSDQPQNANANSNVNMSATALLQKAAEIGATSTTTAATND 360 361 PSTFLQSFPLKSTDQTTSYDSGEKFFALFGSNNNIGLMSRSHDHQEIENARNDVTVASAL 420 421 DELQNYPWKRRRVDGGGEVGGGGQTRDFLGVGVQTLCHPSSINGWI |
| Interface Residues: | 48, 51, 55, 77, 78, 79, 80, 82, 83, 84, 85, 86, 89, 90, 92, 93, 96, 97, 100, 111, 112, 113, 114, 117, 121, 122, 125, 126, 127, 128, 130, 131, 152, 153, 154, 155, 156, 158, 159, 179, 180, 181, 182, 185 |
| 3D-footprint Homologues: | 8cuc_F, 7y3l_A, 5kkq_D, 7ysf_A, 2gli_A, 6u9q_A, 5ei9_F, 2i13_A, 1llm_D, 5v3j_F, 8gn3_A, 4m9v_C, 6wmi_A, 7y3m_I, 6e94_A, 2jpa_A, 1tf3_A, 1tf6_A, 4x9j_A, 6ml4_A, 1g2f_F, 5kl3_A, 1ubd_C, 5k5i_A, 1mey_C, 2lt7_A, 8h9h_G, 7n5w_A, 2kmk_A, 2drp_D, 7eyi_G, 2wbs_A |
| Binding Motifs: | M0329 / MA1157.1 ttwwtTTTTGTCgTtTwsyk M0330 wtTTTTGTCGTTTwsyk MA1157.2 TTTTGTCgTtTw |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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