Transcription Factor
| Accessions: | AGL15 (Athamap 20091028), Q38847 (JASPAR 2024), T23985 (AthalianaCistrome v4_May2016) |
| Names: | AGL15, AGL15_ARATH, AT5G13790, T23985; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MADS |
| Length: | 268 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 73-166 K-box region |
| Sequence: (in bold interface residues) | 1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60 61 GMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSL 120 121 EQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELRSFLPSFTHYVPS 180 181 YIKCFAIDPKNALINHDSKCSLQNTDSDTTLQLGLPGEAHDRRTNEGERESPSSDSVTTN 240 241 TSSETAERGDQSSLANSPPEAKRQRFSV |
| Interface Residues: | 3, 4, 15, 18, 19, 23, 119 |
| 3D-footprint Homologues: | 7x1n_C, 1n6j_A, 1c7u_A, 1hbx_A, 1mnm_A, 6ppr_A |
| Binding Motifs: | AGL15 tTwCywwwwwwrGwAa MA0548.1 TTTCywtTTTtGKaw M0481 / MA0548.2 cTTTCYwtWTTkGGwAAsw M0482 wwcTTTCYwtWTTkGGwAAst MA0548.3 TTTCYwtWTTkGGwAA |
| Binding Sites: | MA0548.1.1 MA0548.1.10 MA0548.1.11 MA0548.1.12 MA0548.1.13 MA0548.1.14 MA0548.1.15 MA0548.1.16 MA0548.1.17 MA0548.1.18 MA0548.1.19 MA0548.1.2 MA0548.1.20 MA0548.1.3 MA0548.1.4 MA0548.1.5 MA0548.1.6 MA0548.1.7 MA0548.1.8 MA0548.1.9 MA0548.2.1 MA0548.2.10 MA0548.2.11 MA0548.2.12 MA0548.2.13 MA0548.2.14 MA0548.2.15 MA0548.2.16 MA0548.2.17 MA0548.2.18 MA0548.2.19 MA0548.2.2 MA0548.2.20 MA0548.2.3 MA0548.2.4 / MA0548.2.5 MA0548.2.6 MA0548.2.7 MA0548.2.8 MA0548.2.9 MA0548.3.1 / MA0548.3.2 MA0548.3.10 MA0548.3.11 MA0548.3.12 MA0548.3.13 MA0548.3.14 MA0548.3.15 MA0548.3.16 MA0548.3.17 MA0548.3.18 MA0548.3.19 MA0548.3.20 MA0548.3.3 MA0548.3.4 / MA0548.3.5 MA0548.3.6 MA0548.3.7 MA0548.3.8 MA0548.3.9 |
| Publications: | Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed] |
| Related annotations: | PaperBLAST |
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