Transcription Factor

Accessions: AGL15 (Athamap 20091028), Q38847 (JASPAR 2018), T23985 (AthalianaCistrome v4_May2016)
Names: AGL15, AGL15_ARATH, AT5G13790, T23985;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2018 2, AthalianaCistrome v4_May2016 3
1 B├╝low L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MADS
Length: 268
Pfam Domains: 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain)
73-166 K-box region
Sequence:
(in bold interface residues)
1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60
61 GMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSL 120
121 EQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELRSFLPSFTHYVPS 180
181 YIKCFAIDPKNALINHDSKCSLQNTDSDTTLQLGLPGEAHDRRTNEGERESPSSDSVTTN 240
241 TSSETAERGDQSSLANSPPEAKRQRFSV
Interface Residues: 3, 4, 15, 18, 19, 23
3D-footprint Homologues: 1hbx_D, 1n6j_A, 1egw_B, 3p57_C, 1mnm_A
Binding Motifs: AGL15 tTwCywwwwwwrGwAa
MA0548.1 TTTCywtTTTtGKaw
MA0548.2 / M0481 cTTTCYwtWTTkGGwAAsw
M0482 wwcTTTCYwtWTTkGGwAAst
Binding Sites: MA0548.1.1
MA0548.1.10
MA0548.1.11
MA0548.1.12
MA0548.1.13
MA0548.1.14
MA0548.1.15
MA0548.1.16
MA0548.1.17
MA0548.1.18
MA0548.1.19
MA0548.1.2
MA0548.1.20
MA0548.1.3
MA0548.1.4
MA0548.1.5
MA0548.1.6
MA0548.1.7
MA0548.1.8
MA0548.1.9
MA0548.2.1
MA0548.2.10
MA0548.2.11
MA0548.2.12
MA0548.2.13
MA0548.2.14
MA0548.2.15
MA0548.2.16
MA0548.2.17
MA0548.2.18
MA0548.2.19
MA0548.2.2
MA0548.2.20
MA0548.2.3
MA0548.2.4 / MA0548.2.5
MA0548.2.6
MA0548.2.7
MA0548.2.8
MA0548.2.9
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]
Related annotations: PaperBLAST

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.