Transcription Factor

Accessions: Q8H0W3 (JASPAR 2024), T26473 (AthalianaCistrome v4_May2016)
Names: RVE6_ARATH, At5g52660, T26473;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related
Length: 331
Pfam Domains: 72-116 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSK 60
61 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 120
121 QKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLM 180
181 TSPTTAAAAPWTNNAQTISFTPLPKAGAGANNNCSSSSENTPRPRSNRDARDHGNVGHSL 240
241 RVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHRR 300
301 LLSSYDIGSETATDHGGVNKTLNKDPPEIST
Interface Residues: 72, 107, 110, 111, 114, 115, 263, 264, 269, 270
3D-footprint Homologues: 6j5b_C, 7d3t_D, 3osg_A, 8b4h_A
Binding Motifs: M0608 / MA1183.1 AGATATTTTtt
M0591 AGATATTTtttt
MA1183.2 AGATATTTT
Binding Sites: MA1183.1.1
MA1183.1.10
MA1183.1.11
MA1183.1.12
MA1183.1.13
MA1183.1.14
MA1183.1.15
MA1183.1.16
MA1183.1.17
MA1183.1.18
MA1183.1.19
MA1183.1.2
MA1183.1.20
MA1183.1.3
MA1183.1.4
MA1183.1.5
MA1183.1.6
MA1183.1.7
MA1183.1.8
MA1183.1.9
MA1183.2.20
MA1183.2.1
MA1183.2.10
MA1183.2.11
MA1183.2.12
MA1183.2.13
MA1183.2.14
MA1183.2.15
MA1183.2.16
MA1183.2.17
MA1183.2.18
MA1183.2.19
MA1183.2.2
MA1183.2.3
MA1183.2.4
MA1183.2.5
MA1183.2.6
MA1183.2.7
MA1183.2.8
MA1183.2.9
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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