Transcription Factor

Accessions: ZIC2_HUMAN (HOCOMOCO 10), ZIC2 (humanC2H2ZF-ChIP Feb2015)
Names: ZIC2_HUMAN, Zinc finger protein of the cerebellum 2, Zinc finger protein ZIC 2, ENSG00000043355, O95409, ZIC2
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1, humanC2H2ZF-ChIP Feb2015 2
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
2 Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33:555-62 (2015). [Pubmed]
Uniprot: O95409
Notes: TF family: C2H2 experiment: ChIP-seq/MEME/B1H-RC
Length: 532
Pfam Domains: 273-291 C2H2-type zinc finger
320-345 Zinc-finger double domain
333-357 C2H2-type zinc finger
333-357 Zinc finger, C2H2 type
349-376 Zinc-finger double domain
363-387 C2H2-type zinc finger
381-404 Zinc-finger double domain
393-415 Zinc finger, C2H2 type
393-415 C2H2-type zinc finger
Sequence:
(in bold interface residues)
1 MLLDAGPQFPAIGVGSFARHHHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAAAHMGAF 60
61 KLNPGAHELSPGQSSAFTSQGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFL 120
121 FRSRGFGDSAPGGGQHGLFGPGAGGLHHAHSDAQGHLLFPGLPEQHGPHGSQNVLNGQMR 180
181 LGLPGEVFGRSEQYRQVASPRTDPYSAAQLHNQYGPMNMNMGMNMAAAAAHHHHHHHHHP 240
241 GAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNH 300
301 VCFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGE 360
361 KPFQCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSPQ 420
421 GSESSPAASSGYESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGS 480
481 GSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSSNFNEWYV
Interface Residues: 278, 279, 281, 282, 285, 315, 316, 317, 318, 319, 322, 326, 345, 346, 347, 348, 349, 351, 352, 353, 354, 355, 357, 358, 361, 375, 376, 377, 378, 379, 380, 381, 382, 383, 386, 403, 404, 405, 406, 407, 408, 409, 410, 411, 434, 435
3D-footprint Homologues: 5v3j_F, 1ubd_C, 1tf3_A, 7w1m_H, 8cuc_F, 7n5w_A, 2gli_A, 8ssq_A, 1tf6_A, 8ssu_A, 6ml4_A, 4x9j_A, 8gn3_A, 5kkq_D, 5ei9_F, 7eyi_G, 6e94_A, 7ysf_A, 6wmi_A, 5k5i_A, 2i13_A, 5und_A, 3uk3_C, 6jnm_A, 7y3l_A, 2kmk_A, 5kl3_A, 1g2f_F, 1llm_D, 2v6e_B, 1mey_C, 6blw_A, 6u9q_A, 5yel_A, 8h9h_G, 2lt7_A, 7y3m_I, 6a57_A, 2jpa_A, 7txc_E, 5yj3_D, 5k5l_F, 2wbs_A, 2drp_D, 1f2i_J, 4m9v_C
Binding Motifs: ZIC2_HUMAN.H10MO.C|M01617 kGGGtGGTc
ZIC2_ChIP cyCCTGCtGrg
Related annotations: PaperBLAST

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