Transcription Factor
| Accessions: | Q9ZPX0 (JASPAR 2024), T07368 (AthalianaCistrome v4_May2016) |
| Names: | GAT20_ARATH, GATA transcription factor 20, Protein HAN-LIKE 1, AT2G18380, GATA20, T07368; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-GATA |
| Length: | 208 |
| Pfam Domains: | 94-128 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MMGYQTNSNFSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSA 60 61 NSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACG 120 121 IRFKKEERRATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQ 180 181 RVPYFSPVPEMEYPYVDNVTASSFMSWN |
| Interface Residues: | 76, 103, 104, 106, 117, 121, 122 |
| 3D-footprint Homologues: | 4i3h_A, 4z4q_B, 3dfx_B, 3vd6_C, 1gat_A, 4hc9_A, 4gat_A |
| Binding Motifs: | M0299 / MA1324.1 ATCsGATC M0282 tyGATCkGATyad |
| Publications: | Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). [Pubmed] |
| Related annotations: | PaperBLAST |
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