Transcription Factor
Accessions: | P52950 (JASPAR 2024) |
Names: | DBX1_MOUSE, Developing brain homeobox protein 1, Homeobox protein DBX1 |
Organisms: | Mus musculus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 335 |
Pfam Domains: | 184-238 Homeobox domain |
Sequence: (in bold interface residues) | 1 MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPTYLSRSIPA 60 61 ASLSPPSQEAPAALADSGTSDLGSPGSGSRRGSSPQTALSPASEPTFLKFGVNAILSSAP 120 121 RRETSPALLQSPPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRR 180 181 GMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKLGLKDSQVKIWFQNRRMKWRNSK 240 241 ERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDEEEDNPGARLAYHAPADPRHLLEGP 300 301 LPASPAHSSSPGKPSDFSDSDEDEEGEEDEEITVS |
Interface Residues: | 180, 182, 183, 184, 185, 223, 224, 226, 227, 230, 231, 234, 235, 250, 253 |
3D-footprint Homologues: | 1mnm_C, 2lkx_A, 1zq3_P, 5zfz_A, 3d1n_M, 1nk2_P, 2ld5_A, 1puf_A, 1fjl_B, 6a8r_A, 3a01_E, 2h1k_B, 1b72_A, 5jlw_D, 3lnq_A, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 3rkq_B, 2r5y_A, 1jgg_B, 7psx_B, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 2d5v_B, 7q3o_C, 1au7_A, 7xrc_C, 1ig7_A, 1e3o_C, 2xsd_C, 1le8_A, 3l1p_A, 4qtr_D, 1puf_B, 8g87_X, 1du0_A, 1o4x_A, 5hod_A |
Binding Motifs: | PH0018.1 twrttaATTAwtaawwr |
Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.