Transcription Factor
| Accessions: | ANAC58 (ArabidopsisPBM 20140210), Q9LS50 (JASPAR 2024), T14138 (AthalianaCistrome v4_May2016) |
| Names: | anac058, Q9LS50_ARATH, AT3G18400, T14138; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | NAC, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 314 |
| Pfam Domains: | 5-131 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MEENLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKE 60 61 WYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGVLVGMKKTLVFYKGRAPKGEK 120 121 SNWVMHEYRLESKQPFNPTNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSFGSPCDANSS 180 181 MANEFEDIDELPNLNSNSSTIDYNNHIHQYSQRNVYSEDNTTSTAGLNMNMNMASTNLQS 240 241 WTTSLLGPPLSPINSLLLKAFQIRNSYSFPKEMIPSFNHSSLQQGVSNMIQNASSSSQVQ 300 301 PQPQEEAFNMDSIW |
| Interface Residues: | 71, 76, 78, 87, 89, 91, 111, 115, 116, 117, 120 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | ANAC58 rrcAMGCaAy MA0938.1 rcAMGCaA M0636 CkTGtrmmaCAmGywA M0665 TwCKTGtdyhaCAmGtwA MA0938.2 wwggTTaCkTGTgwcaCAAGwaAy MA0938.3 TTaCkTGTgwcaCAAGwaA |
| Binding Sites: | MA0938.1.1 MA0938.1.10 MA0938.1.11 MA0938.1.12 MA0938.1.13 MA0938.1.14 MA0938.1.15 MA0938.1.16 MA0938.1.17 MA0938.1.18 MA0938.1.19 MA0938.1.2 MA0938.1.20 MA0938.1.3 MA0938.1.4 MA0938.1.5 MA0938.1.6 MA0938.1.7 MA0938.1.8 MA0938.1.9 MA0938.2.2 MA0938.2.3 MA0938.2.1 MA0938.2.4 MA0938.2.8 MA0938.2.5 MA0938.2.9 MA0938.2.7 MA0938.2.10 MA0938.2.11 MA0938.2.12 MA0938.2.13 MA0938.2.14 MA0938.2.15 MA0938.2.16 MA0938.2.17 MA0938.2.18 MA0938.2.19 MA0938.2.20 MA0938.2.6 MA0938.3.1 MA0938.3.10 MA0938.3.11 MA0938.3.12 MA0938.3.13 MA0938.3.14 MA0938.3.15 MA0938.3.16 MA0938.3.17 MA0938.3.18 MA0938.3.19 MA0938.3.2 MA0938.3.20 MA0938.3.3 MA0938.3.4 MA0938.3.5 MA0938.3.6 MA0938.3.7 MA0938.3.8 MA0938.3.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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