Transcription Factor
Accessions: | Q9VN10 (JASPAR 2024) |
Names: | Huckebein, Q9VN10_DROME, RE60512p |
Organisms: | Drosophila melanogaster |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 297 |
Pfam Domains: | 195-217 C2H2-type zinc finger 195-217 Zinc finger, C2H2 type 210-236 Zinc-finger double domain 223-247 Zinc finger, C2H2 type 223-247 C2H2-type zinc finger 240-263 Zinc-finger double domain 253-275 Zinc finger, C2H2 type 253-275 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 MSTINLHPPQTYSRLFRPWDTQRQAATSAAPRTVKQEPEAITIKTELASSSFGHDCDGDF 60 61 SSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAATAS 120 121 LAPPNQHAPFLSAASDLYYAAAAAAAAAASTPTAVPGFGMDPFTMGLMEQEYARVMAEDA 180 181 QLKALNSRKQRPKKFKCPNCDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEEL 240 241 TRHKRIHTGLRPYPCSACGKKFGRRDHLKKHMKTHMPQERQLGPSIFVPMYSYLYGY |
Interface Residues: | 178, 179, 180, 181, 184, 195, 205, 206, 207, 208, 209, 211, 212, 214, 215, 216, 218, 235, 236, 237, 238, 239, 241, 242, 243, 246, 263, 264, 265, 266, 267, 268, 269, 270, 271, 280 |
3D-footprint Homologues: | 6ml4_A, 2i13_A, 2kmk_A, 1tf3_A, 6jnm_A, 7n5w_A, 8ssq_A, 7w1m_H, 5und_A, 2gli_A, 1g2f_F, 7eyi_G, 5k5l_F, 8ssu_A, 1tf6_A, 4x9j_A, 8gn3_A, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 5ei9_F, 1mey_C, 7ysf_A, 6wmi_A, 5k5i_A, 5v3j_F, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 6a57_A, 2jpa_A, 8cuc_F, 7y3l_A, 3uk3_C, 1llm_D, 2wbs_A, 5yel_A, 7txc_E, 5kl3_A, 2drp_D, 1f2i_J, 4m9v_C, 5yj3_D |
Binding Motifs: | MA0450.1 kRGGCGTGA |
Binding Sites: | MA0450.1.1 / MA0450.1.10 / MA0450.1.11 / MA0450.1.12 / MA0450.1.2 / MA0450.1.3 / MA0450.1.4 / MA0450.1.5 / MA0450.1.6 / MA0450.1.7 / MA0450.1.8 / MA0450.1.9 MA0450.1.13 / MA0450.1.14 / MA0450.1.15 MA0450.1.16 MA0450.1.17 / MA0450.1.18 / MA0450.1.19 / MA0450.1.20 |
Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.