Transcription Factor

Accessions: Q9SA07 (JASPAR 2018), T06837 (AthalianaCistrome v4_May2016)
Names: Agamous-like MADS-box protein AGL63, AGL63_ARATH, Protein GORDITA, AGL63, AT1G31140, T06837;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:MADS
Length: 215
Pfam Domains: 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain)
89-157 K-box region
Sequence:
(in bold interface residues)
1 MRKGKRVIKKIEEKIKRQVTFAKRKKSLIKKAYELSVLCDVHLGLIIFSHSNRLYDFCSN 60
61 STSMENLIMRYQKEKEGQTTAEHSFHSDQCSDCVKTKESMMREIENLKLNLQLYDGHGLN 120
121 LLTYDELLSFELHLESSLQHARARKSEFMHQQQQQQTDQKLKGKEKGQGSSWEQLMWQAE 180
181 RQMMTCQRQKDPAPANEGGVPFLRWGTTHRRSSPP
Interface Residues: 15, 18, 19, 23, 90
3D-footprint Homologues: 1mnm_A, 1hbx_D, 1n6j_A, 1egw_B, 3p57_C, 5gpc_B
Binding Motifs: MA1203.1 / M0478 TkCCAAAAAtGGmAA
Binding Sites: MA1203.1.1
MA1203.1.10
MA1203.1.11
MA1203.1.12
MA1203.1.13
MA1203.1.14
MA1203.1.15
MA1203.1.16
MA1203.1.17
MA1203.1.18
MA1203.1.19
MA1203.1.2
MA1203.1.20
MA1203.1.3
MA1203.1.4
MA1203.1.5
MA1203.1.6
MA1203.1.7
MA1203.1.8
MA1203.1.9
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]
Related annotations: PaperBLAST

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