Transcription Factor

Accessions: T012393_1.02 (CISBP 1.02), Q9ZPW3 (JASPAR 2024)
Names: AT2G18300, T012393_1.02;, AtbHLH64, Basic helix-loop-helix protein 64, bHLH 64, bHLH transcription factor bHLH064, HBI1_ARATH, Protein HOMOLOG OF BEE2 INTERACTING WITH IBH1, Transcription factor EN 79, Transcription factor HBI1
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 337
Pfam Domains: 196-242 Helix-loop-helix DNA-binding domain
Sequence:
(in bold interface residues)
1 MLEGLVSQESLSLNSMDMSVLERLKWVQQQQQQLQQVVSHSSNNSPELLQILQFHGSNND 60
61 ELLESSFSQFQMLGSGFGPNYNMGFGPPHESISRTSSCHMEPVDTMEVLLKTGEETRAVA 120
121 LKNKRKPEVKTREEQKTEKKIKVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKL 180
181 DYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQC 240
241 LQRQVEFLSMKLAVLNPELELAVEDVSVKQFQAYFTNVVASKQSIMVDVPLFPLDQQGSL 300
301 DLSAINPNQTTSIEAPSGSWETQSQSLYNTSSLGFHY
Interface Residues: 191, 195, 196, 197, 199, 200, 203, 204, 227
3D-footprint Homologues: 1an4_A, 6sei_C, 7xi3_A, 5gnj_I, 4h10_A, 5nj8_D, 1a0a_B, 7d8t_A, 4zpk_A, 5v0l_A, 1am9_A, 7ssa_L, 5eyo_A, 6g1l_A, 8osl_P
Binding Motifs: M0155_1.02 cgkGCACGTGct
MA1025.1 cgkGCACGTGct
MA1025.2 GCACGTG
Publications: Fan M, Bai MY, Kim JG, Wang T, Oh E, Chen L, Park CH, Son SH, Kim SK, Mudgett MB, Wang ZY. The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis. Plant Cell 26:828-41 (2014). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.