Transcription Factor
| Accessions: | T023877_1.02 (CISBP 1.02), Q39162 (JASPAR 2024), T24339 (AthalianaCistrome v4_May2016) |
| Names: | T023877_1.02;, TGA4, AtbZIP57, bZIP transcription factor 57, OBF4, Ocs element-binding factor 4, TGA4_ARATH, Transcription factor TGA4, AT5G10030, T24339; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 364 |
| Pfam Domains: | 78-110 bZIP transcription factor 79-126 Basic region leucine zipper 165-242 Seed dormancy control |
| Sequence: (in bold interface residues) | 1 MNTTSTHFVPPRRFEVYEPLNQIGMWEESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSHG 60 61 TEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQEL 120 121 DRARQQGFYVGNGVDTNALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSD 180 181 IELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240 241 LPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTC 300 301 AMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQ 360 361 REPT |
| Interface Residues: | 88, 89, 91, 92, 95, 96 |
| 3D-footprint Homologues: | 1dh3_C, 2dgc_A |
| Binding Motifs: | M0271_1.02 gmTgACGtmr M0210 / MA1335.1 TgACGTCAkCa M0199 rwtGmTGACGTCAyh |
| Binding Sites: | MA1335.1.1 MA1335.1.10 MA1335.1.11 MA1335.1.12 MA1335.1.13 MA1335.1.14 MA1335.1.15 MA1335.1.16 MA1335.1.17 MA1335.1.18 MA1335.1.19 MA1335.1.2 MA1335.1.20 MA1335.1.3 MA1335.1.4 MA1335.1.5 MA1335.1.6 MA1335.1.7 MA1335.1.8 MA1335.1.9 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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