Transcription Factor

Accessions: FUS3 (Athamap 20091028), Q9LW31 (JASPAR 2024), T14651 (AthalianaCistrome v4_May2016)
Names: B3 domain-containing transcription factor FUS3, FUS3, Protein FUSCA3, FUS3_ARATH, AT3G26790, T14651;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Uniprot: Q9LW31
Notes: ecotype:Col-0, experiment type: DAP-seq, family:ABI3-VP1
Length: 313
Pfam Domains: 92-181 B3 DNA binding domain
Sequence:
(in bold interface residues)
1 MMVDENVETKASTLVASVDHGFGSGSGHDHHGLSASVPLLGVNWKKRRMPRQRRSSSSFN 60
61 LLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPA 120
121 LECKEGIPIRMEDLDGFHVWTFKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQD 180
181 LYSNNYVIQARKASEEEEVDVINLEEDDVYTNLTRIENTVVNDLLLQDFNHHNNNNNNNS 240
241 NSNSNKCSYYYPVIDDVTTNTESFVYDTTALTSNDTPLDFLGGHTTTTNNYYSKFGTFDG 300
301 LGSVENISLDDFY
Interface Residues: 97, 99, 104, 105, 106, 108, 147, 149, 150, 151, 152, 154
3D-footprint Homologues: 6j9b_A, 7et6_A, 6fas_B, 6j9c_D
Binding Motifs: FUS3 SCATGCAW
MA0565.1 yGCATGCrs
M0003 ahatrCATGCAwrya
MA0565.2 whACATGCAw
MA0565.3 ACATGCA
Binding Sites: FUS3_2
FUS3_3
FUS3_4
FUS3_1
MA0565.1.1 / MA0565.1.4
MA0565.1.10 / MA0565.1.3
MA0565.1.11
MA0565.1.12 / MA0565.1.13
MA0565.1.14
MA0565.1.15 / MA0565.1.16
MA0565.1.17
MA0565.1.18
MA0565.1.19
MA0565.1.2
MA0565.1.20
MA0565.1.5
MA0565.1.6
MA0565.1.7
MA0565.1.8
MA0565.1.9
MA0565.2.1 / MA0565.2.20
MA0565.2.10 / MA0565.2.8
MA0565.2.11
MA0565.2.12 / MA0565.2.6
MA0565.2.13 / MA0565.2.5
MA0565.2.14
MA0565.2.15
MA0565.2.16
MA0565.2.17
MA0565.2.18
MA0565.2.19 / MA0565.2.20
MA0565.2.2
MA0565.2.3
MA0565.2.4
MA0565.2.7
MA0565.2.9
MA0565.2.19
MA0565.3.1 / MA0565.3.10 / MA0565.3.11 / MA0565.3.12 / MA0565.3.13 / MA0565.3.14 / MA0565.3.15 / MA0565.3.16 / MA0565.3.17 / MA0565.3.18 / MA0565.3.2 / MA0565.3.20 / MA0565.3.3 / MA0565.3.4 / MA0565.3.5 / MA0565.3.6 / MA0565.3.7 / MA0565.3.8 / MA0565.3.9
MA0565.3.19
Publications: Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H. 2000. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 21:401-8. [Pubmed]

Wang F, Perry SE. Identification of direct targets of FUSCA3, a key regulator of Arabidopsis seed development. Plant Physiol 161:1251-64 (2013). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.