Transcription Factor
| Accessions: | T061541_1.02 (CISBP 1.02), P39959 (JASPAR 2024) |
| Names: | T061541_1.02;, YER130C, YEW0_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 443 |
| Pfam Domains: | 390-412 Zinc finger, C2H2 type 391-412 C2H2-type zinc finger 391-410 Zinc-finger of C2H2 type 403-428 Zinc-finger double domain 418-440 C2H2-type zinc finger 418-440 Zinc finger, C2H2 type 418-438 Zinc-finger of C2H2 type |
| Sequence: (in bold interface residues) | 1 MSLYPLQRFESNDTVFSYTLNSKTELFNESRNNDKQHFTLQLIPNANANAKEIDNNNVEI 60 61 INDLTGNTIVDNCVTTATSSNQLERRLSISDYRTENGNYYEYEFFGRRELNEPLFNNDIV 120 121 ENDDDIDLNNESDVLMVSDDELEVNERFSFLKQQPLDGLNRISSTNNLKNLEIHEFIIDP 180 181 TENIDDELEDSFTTVPQSKKKVRDYFKLNIFGSSSSSNNNSNSLGCEPIQTENSSSQKMF 240 241 KNRFFRSRKSTLIKSLPLEQENEVLINSGFDVSSNEESDESDHAIINPLKLVGNNKDIST 300 301 QSIAKTTNPFKSGSDFKMIEPVSKFSNDSRKDLLAAISEPSSSPSPSAPSPSVQSSSSSH 360 361 GLVVRKKTGSMQKTRGRKPSLIPDASKQFGCEFCDRRFKRQEHLKRHVRSLHMCEKPFTC 420 421 HICNKNFSRSDNLNQHVKTHASL |
| Interface Residues: | 372, 374, 375, 378, 399, 400, 401, 402, 403, 405, 406, 407, 410, 411, 414, 415, 428, 429, 430, 431, 432, 433, 434, 435, 436, 439 |
| 3D-footprint Homologues: | 1ubd_C, 3uk3_C, 8cuc_F, 2kmk_A, 7y3l_A, 2i13_A, 8h9h_G, 1llm_D, 6blw_A, 5kkq_D, 2wbs_A, 7ysf_A, 6wmi_A, 5yel_A, 5ei9_F, 2jpa_A, 1mey_C, 5kl3_A, 2drp_D, 1f2i_J, 7eyi_G, 5k5i_A, 8ssu_A, 1tf6_A, 6ml4_A, 5und_A, 2gli_A, 8gn3_A, 1g2f_F, 7n5w_A, 5k5l_F, 2lt7_A, 6u9q_A, 5v3j_F, 4x9j_A, 4m9v_C, 8ssq_A, 7w1m_H, 6e94_A, 7y3m_I, 1yuj_A, 7txc_E, 5yj3_D, 6a57_A |
| Binding Motifs: | M0513_1.02 AtAGGGGg MA0423.1 mCCCCTwTh MA0423.2 CCCCTwT |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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