Transcription Factor

						

			
Accessions: A8WQQ9 (JASPAR 2024)

			
Names: A8WQQ9_CAEBR
Organisms: Caenorhabditis briggsae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: A8WQQ9
Length: 327
Pfam Domains:   116-172 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MDDNTSTLTALHQHQQQQSHNRFPHSLVCVGPLDHHPLLPEQSLSSSLAPLTHNPYAFNY   60
  61 PIPLAPTEITTKLPKLELMALDVKQEHEDAIHNESASPADSSGNGSTNGGKAQKPRRQRT  120
 121 HFTSHQLTELENWFARNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNYVIE  180
 181 NGQATSKPSTMTPGIVPTQSLDPLGSLQNTFPQNLLQSSSQLDDSAVTASPFYGYGGTWQ  240
 241 PNPYYSRSNQFNWQIKPQFQTLPMPTTTSPSRFTTAVSTGLTPLPTAQAAFSASSSNDKL  300
 301 KLMDGLSNSLTSSLGQTYQPCQYTGPL
Interface Residues: 116, 117, 118, 119, 121, 157, 158, 160, 161, 164, 165, 168, 169, 172
3D-footprint Homologues: 2h1k_B, 1puf_A, 3d1n_M, 5zfz_A, 1fjl_B, 1ig7_A, 6a8r_A, 3cmy_A, 2lkx_A, 1jgg_B, 1mnm_C, 6m3d_C, 1nk2_P, 4j19_B, 1zq3_P, 3lnq_A, 7q3o_C, 6es3_K, 2ld5_A, 5jlw_D, 3rkq_B, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 1puf_B, 5flv_I, 3l1p_A, 2hos_A, 5zjt_E, 3a01_E, 7psx_B, 1b72_A, 5hod_A, 1e3o_C, 1le8_A, 1le8_B, 1du0_A, 8g87_X, 1k61_B, 1o4x_A, 4qtr_D
Binding Motifs: MA1443.1 wTAATCCy
MA1443.2 TAATCC
			
Publications: Cinar H, Keles S, Jin Y. Expression profiling of GABAergic motor neurons in Caenorhabditis elegans. Curr Biol 15:340-6 (2005). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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