Transcription Factor
Accessions: | T081983_1.02 (CISBP 1.02), FOXA2_MOUSE (HOCOMOCO 10), P35583 (JASPAR 2024) |
Names: | Foxa2, T081983_1.02;, Forkhead box protein A2, FOXA2_MOUSE, Hepatocyte nuclear factor 3-beta, HNF-3-beta, HNF-3B |
Organisms: | Mus musculus |
Libraries: | CISBP 1.02 1, HOCOMOCO 10 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P35583 |
Notes: | experiment type:PBM, family:Forkhead |
Length: | 459 |
Pfam Domains: | 17-158 Forkhead N-terminal region 159-254 Fork head domain 374-448 HNF3 C-terminal domain |
Sequence: (in bold interface residues) | 1 MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYMSMSAAAMGGGSGNMSA 60 61 GSMNMSSYVGAGMSPSLAGMSPGAGAMAGMSGSAGAAGVAGMGPHLSPSLSPLGGQAAGA 120 121 MGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKML 180 181 TLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSG 240 241 NMFENGCYLRRQKRFKCEKQLALKEAAGAASSGGKKTAPGSQASQAQLGEAAGSASETPA 300 301 GTESPHSSASPCQEHKRGGLSELKGAPASALSPPEPAPSPGQQQQAAAHLLGPPHHPGLP 360 361 PEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGGYGSPM 420 421 PGSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS |
Interface Residues: | 149, 151, 153, 154, 156, 202, 204, 205, 206, 208, 209, 210, 212, 213, 222, 229, 254 |
3D-footprint Homologues: | 7yz7_A, 7yzb_A, 7vox_H, 2hdc_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 6el8_A, 7tdx_A, 3l2c_A, 3qrf_G |
Binding Motifs: | MA0047.2 TRTTTACwywgg PB0015.1 wawawGTAAAyAAwvab PB0119.1 rrwaaTAACAaasgs M0729_1.02 GTAAAyAa FOXA2_MOUSE.H10MO.B|M01095 tTrTTTACwywg |
Binding Sites: | MA0047.2.1 MA0047.2.10 MA0047.2.11 MA0047.2.12 MA0047.2.13 MA0047.2.14 MA0047.2.15 MA0047.2.16 MA0047.2.17 MA0047.2.18 MA0047.2.19 MA0047.2.2 MA0047.2.20 MA0047.2.3 MA0047.2.4 MA0047.2.5 MA0047.2.6 MA0047.2.7 MA0047.2.8 MA0047.2.9 |
Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Tuteja G, White P, Schug J, Kaestner K.H. Extracting transcription factor targets from ChIP-Seq data. Nucleic acids research 37:e113 (2009). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.