Transcription Factor

Accessions: 6sdg_B (3D-footprint 20231221)
Names: A0A0G3FH20_MARPO, Auxin response factor
Organisms: Marchantia aquatica, Marchantia polymorpha (Liverwort)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: A0A0G3
Length: 314
Pfam Domains: 84-185 B3 DNA binding domain
209-289 Auxin response factor
Sequence:
(in bold interface residues)
1 IDAELWYACAGPQKALPPVGSVVAYLPQGHIEQVASFNNQIPRYNLPAVIPCMLNDIQLS 60
61 ADPDSDEVYATLTLCPMSEQSRSFTKTLTVSDTSTHGGFSVPRRAADDCLPKLDMSLNPP 120
121 NQELVAKDLHGNEWRFRHIFRGQPKRHLLTTGWSVFVSQKRLVAGDAVLFLRGENGQLRV 180
181 GVRRAPRQQQLQPKVLTSPTMHIGVLAAAAHAATEKSRFSLIYNPRSCPSEFVIPYSKYL 240
241 KAVKSNFNVGQRFKMKFESPSDRRHTGTITGICDFDPARWPGSEWRSLQVNWDESSSSER 300
301 QERVSPWEVEPGNS
Interface Residues: 91, 96, 97, 98, 100, 141, 143, 144, 146, 147
3D-footprint Homologues: 7et6_A, 6j9c_D, 6sdg_B, 6ycq_A
Binding Motifs: 6sdg_AB tTGTcGGCnnnnnGCcnACA
6sdg_B tTGTcGGC
Binding Sites: 6sdg_C
6sdg_D
Publications: Kato H, Mutte SK, Suzuki H, Crespo I, Das S, Radoeva T, Fontana M, Yoshitake Y, Hainiwa E, van den Berg W, Lindhoud S, Ishizaki K, Hohlbein J, Borst JW, Boer DR, Nishihama R, Kohchi T, Weijers D. Design principles of a minimal auxin response system. Nat Plants 6:473-482 (2020). [Pubmed]
Related annotations: PaperBLAST

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