Transcription Factor
| Accessions: | T019537_1.02 (CISBP 1.02), A9RZ73 (JASPAR 2024) |
| Names: | fgenesh1_pg.scaffold_37000071, T019537_1.02;, A9RZ73_PHYPA |
| Organisms: | Physcomitrella patens, moss |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 845 |
| Pfam Domains: | 329-378 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MAFVATAGQKQLVPERAIRSSSSLGYSSFGELAPGDSVTQQQREFQVVHRYTMAQQHAER 60 61 AQSRHFAHSEDTKPSTHDFLSLYDKGSQQAENVSSAGLSSSLTTHDFLQPLERNGARPTS 120 121 RDAPVLREKHSSGENGQSRHSTPGPGEQAHPTSSPNYAAIKVPYTVPPNSMLRMVGEAEA 180 181 VRQGRNYPIATLSSREDHSGSETFKGVEIAVGPEAANAQENLAHWPGVRFQFGMPPDLTF 240 241 TAGNPAAKSVVENGHQLLPTMTKHWAQAAQGMIESPKRPARPPSDEDEDDDEDSSERPKV 300 301 NRKEPMLRKGDGAQRMDSKNADLRGVTPRSKHSATEQRRRSKINDRFQMLRDLVPHSDQK 360 361 RDKASFLLEVIEYIQVLQDKVRKYETVEQGRHQERLKSMVWDLCKRGAAGSGDETSQINA 420 421 LVFAKDLNSGVRSVDIKPGTEVPADRVPRSSEEAAPISEAHSTGGLNAQQASSRPACSIH 480 481 SCVSSLGGEKESATAVTAVGVPLQQAIPSPHAFPIVPSKGQREQDSNRGTPASNSNAPRK 540 541 EKTSDMDLVSSRENGYAHDTTPDHQFEVRPRISSGQADQNSDHQPKDHQMSATTIVGRMD 600 601 GVQAGLLSSAPRQPQGGPQHKEDANKHTRHPQTNQNDHMATRDGFAVFPNIPQPFPRIQG 660 661 GVINVSSVYSQGLLDTLTRALQSSGVDLSRANISVQIDLGKNATVAPGDTSAKVATTPES 720 721 SAQSHQSQGRTRPAPSVPESEPARKRPKLLSSAYTKHHCLLRSGCGKIEKDRFGFRLCYD 780 781 QHDAGFWHNECRSFGLSFAKISLSGLEMAIWRTALLRFVISFEPTSAGKEGVHAVVACSL 840 841 ITIFH |
| Interface Residues: | 331, 332, 333, 335, 336, 339, 340, 361, 363 |
| 3D-footprint Homologues: | 1an4_A, 5v0l_A, 4h10_A, 7rcu_E, 5gnj_I, 6g1l_A, 4h10_B, 7ssa_L, 5i50_B, 1am9_A, 7d8t_A, 4zpk_A, 7xi3_A, 5nj8_D, 7f2f_B, 5eyo_A, 8osl_P |
| Binding Motifs: | M0251_1.02 rkCACGTGmy MA1011.1 rkCACGTGmy |
| Publications: | Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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