Transcription Factor
| Accessions: | Q00958 (JASPAR 2024), LEAFY (EEADannot 2023-12-22) |
| Names: | LFY_ARATH, LEAFY, LEAFY3, LFY, LFY3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Uniprot: | Q00958 |
| Notes: | family:Floricaula/leafy |
| Length: | 420 |
| Pfam Domains: | 1-390 Floricaula / Leafy protein |
| Sequence: (in bold interface residues) | 1 MDPEGFTSGLFRWNPTRALVQAPPPVPPPLQQQPVTPQTAAFGMRLGGLEGLFGPYGIRF 60 61 YTAAKIAELGFTASTLVGMKDEELEEMMNSLSHIFRWELLVGERYGIKAAVRAERRRLQE 120 121 EEEEESSRRRHLLLSAAGDSGTHHALDALSQEGLSEEPVQQQDQTDAAGNNGGGGSGYWD 180 181 AGQGKMKKQQQQRRRKKPMLTSVETDEDVNEGEDDDGMDNGNGGSGLGTERQREHPFIVT 240 241 EPGEVARGKKNGLDYLFHLYEQCREFLLQVQTIAKDRGEKCPTKVTNQVFRYAKKSGASY 300 301 INKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGSWRQACYKPLVNIACRHGWDID 360 361 AVFNAHPRLSIWYVPTKLRQLCHLERNNAVAAAAALVGGISCTGSSTSGRGGCGGDDLRF 420 |
| Interface Residues: | 233, 287, 302, 303, 304, 305, 307, 308 |
| 3D-footprint Homologues: | 2vy1_A, 4bhk_A |
| Binding Motifs: | MA0590.1 yATkrACCGsCGGTymATr EEAD0005 wdrwCCAayGGwCmAwaww EEAD0138 rrwaCAyyswwwtrycyrdwrgdya EEAD0139 grrwaCAyyswwwtrycyr |
| Publications: | Moyroud E, Minguet E.G, Ott F, Yant L, Posé D, Monniaux M, Blanchet S, Bastien O, Thévenon E, Weigel D, Schmid M, Parcy F. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. The Plant cell 23:1293-306 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.