Transcription Factor
| Accessions: | ATHB9 (Athamap 20091028), O04292 (JASPAR 2024), T03689 (AthalianaCistrome v4_May2016) |
| Names: | ATHB9, ATBH9_ARATH, HD-ZIP protein ATHB-9, Homeobox-leucine zipper protein ATHB-9, Homeodomain transcription factor ATHB-9, Protein PHAVOLUTA, AT1G30490, PHV, T03689; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:HB |
| Length: | 841 |
| Pfam Domains: | 21-79 Homeobox domain 170-378 START domain 690-841 MEKHLA domain |
| Sequence: (in bold interface residues) | 1 MMAHHSMDDRDSPDKGFDSGKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILCN 60 61 IEPRQIKVWFQNRRCREKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVSNLVYENGF 120 121 MKHRIHTASGTTTDNSCESVVVSGQQRQQQNPTHQHPQRDVNNPANLLSIAEETLAEFLC 180 181 KATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPMKVAEILKDRPSWF 240 241 RDCRCVETLNVIPTGNGGTIELVNTQIYAPTTLAAARDFWTLRYSTSLEDGSYVVCERSL 300 301 TSATGGPNGPLSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDVSSVPEVLRPLYES 360 361 SKILAQKMTVAALRHVRQIAQETSGEVQYSGGRQPAVLRTFSQRLCRGFNDAVNGFVDDG 420 421 WSPMSSDGGEDITIMINSSSAKFAGSQYGSSFLPSFGSGVLCAKASMLLQNVPPLVLIRF 480 481 LREHRAEWADYGVDAYSAASLRATPYAVPCVRTGGFPSNQVILPLAQTLEHEEFLEVVRL 540 541 GGHAYSPEDMGLSRDMYLLQLCSGVDENVVGGCAQLVFAPIDESFADDAPLLPSGFRVIP 600 601 LDQKTNPNDHQSASRTRDLASSLDGSTKTDSETNSRLVLTIAFQFTFDNHSRDNVATMAR 660 661 QYVRNVVGSIQRVALAITPRPGSMQLPTSPEALTLVRWITRSYSIHTGADLFGADSQSCG 720 721 GDTLLKQLWDHSDAILCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKTLDDSGR 780 781 RALCSEFAKIMQQGYANLPAGICVSSMGRPVSYEQATVWKVVDDNESNHCLAFTLVSWSF 840 841 V |
| Interface Residues: | 5, 10, 14, 21, 22, 24, 64, 65, 67, 68, 71, 72, 75, 76, 78, 79 |
| 3D-footprint Homologues: | 3a01_E, 2ld5_A, 6a8r_A, 6es3_K, 7psx_B, 1nk2_P, 7q3o_C, 1b72_A, 1mnm_C, 1k61_B, 6ryd_F, 5jlw_D, 7xrc_C, 1le8_A, 1ig7_A, 1e3o_C, 2xsd_C, 1au7_A, 1o4x_A, 1fjl_B, 4qtr_D, 2h1k_B, 6wig_A, 3lnq_A, 2lkx_A, 1puf_A, 8g87_X, 4xrs_G, 3cmy_A, 2hdd_A, 1du0_A, 5zfz_A, 3rkq_B, 2r5y_A, 1puf_B, 1jgg_B, 5flv_I, 3d1n_M, 5zjt_E, 4cyc_A, 1zq3_P, 5hod_A, 3l1p_A, 2hos_A, 6m3d_C |
| Binding Motifs: | ATHB9 / MA0573.1 aahyGTAATGATTrCwybs M0416 rTmATCATTAywwty MA0573.2 GTAATGATTrCwybs |
| Binding Sites: | MA0573.1.1 MA0573.1.10 MA0573.1.11 / MA0573.1.12 MA0573.1.13 MA0573.1.14 MA0573.1.15 MA0573.1.16 MA0573.1.17 MA0573.1.18 MA0573.1.19 MA0573.1.2 MA0573.1.20 MA0573.1.3 MA0573.1.4 MA0573.1.5 MA0573.1.6 MA0573.1.7 MA0573.1.8 MA0573.1.9 MA0573.2.1 MA0573.2.10 MA0573.2.11 / MA0573.2.12 MA0573.2.13 MA0573.2.14 MA0573.2.15 MA0573.2.16 MA0573.2.17 MA0573.2.18 MA0573.2.19 MA0573.2.2 MA0573.2.20 MA0573.2.3 MA0573.2.4 MA0573.2.5 MA0573.2.6 MA0573.2.7 MA0573.2.8 MA0573.2.9 |
| Publications: | Sessa G., Steindler C., Morelli G., Ruberti I. The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins. Plant Mol. Biol. 38:609-622 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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