Transcription Factor
| Accessions: | T020115_1.02 (CISBP 1.02), A9TN45 (JASPAR 2024) |
| Names: | gw1.270.82.1, T020115_1.02;, A9TN45_PHYPA, Fragment, Predicted protein |
| Organisms: | Physcomitrella patens, moss |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 160 |
| Pfam Domains: | 79-126 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 TSTSSVVSDGKNSKSLEANEQTSLKRQRSGLVKAERSASENSGDSASPRSLKATSKPPQD 60 61 LSKQDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKITGKAVMLDEIIN 120 121 YVQSLQRQIEFLSMKLAAVNPRLDYSYDLLGKDMLQSRSP |
| Interface Residues: | 80, 81, 83, 84, 87, 88, 111 |
| 3D-footprint Homologues: | 5v0l_A, 1a0a_B, 7xi3_A, 5eyo_A, 6g1l_A, 1am9_A, 5gnj_I, 7d8t_A, 4h10_A, 5nj8_D, 7ssa_L, 4zpk_A, 8osl_P |
| Binding Motifs: | M0252_1.02 cCACGTGc MA1021.1 cCACGTGc |
| Publications: | Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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