Transcription Factor
| Accessions: | T061548_1.02 (CISBP 1.02), P33400 (JASPAR 2024) |
| Names: | RIM101, T061548_1.02;, PACC_YEAST, pH-response regulator protein RIM101, pH-response transcription factor pacC/RIM101, Regulator of IME2 protein 1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 625 |
| Pfam Domains: | 213-234 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MVPLEDLLNKENGTAAPQHSRESIVENGTDVSNVTKKDGLPSPNLSKRSSDCSKRPRIRC 60 61 TTEAIGLNGQEDERMSPGSTSSSCLPYHSTSHLNTPPYDLLGASAVSPTTSSSSDSSSSS 120 121 PLAQAHNPAGDDDDADNDGDSEDITLYCKWDNCGMIFNQPELLYNHLCHDHVGRKSHKNL 180 181 QLNCHWGDCTTKTEKRDHITSHLRVHVPLKPFGCSTCSKKFKRPQDLKKHLKIHLESGGI 240 241 LKRKRGPKWGSKRTSKKNKSCASDAVSSCSASVPSAIAGSFKSHSTSPQILPPLPVGISQ 300 301 HLPSQQQQRAISLNQLCSDELSQYKPVYSPQLSARLQTILPPLYYNNGSTVSQGANSRSM 360 361 NVYEDGCSNKTIANATQFFTKLSRNMTNNYILQQSGGSTESSSSSGRIPVAQTSYVQPPN 420 421 APSYQSVQGGSSISATANTATYVPVRLAKYPTGPSLTEHLPPLHSNTAGGVFNRQSQYAM 480 481 PHYPSVRAAPSYSSSGCSILPPLQSKIPMLPSRRTMAGGTSLKPNWEFSLNQKSCTNDII 540 541 MSKLAIEEVDDESEIEDDFVEMLGIVNIIKDYLLCCVMEDLDDEESEDKDEENAFLQESL 600 601 EKLSLQNQMGTNSVRILTKYPKILV |
| Interface Residues: | 158, 159, 160, 161, 162, 165, 169, 174, 176, 178, 180, 191, 193, 194, 195, 196, 197, 198, 200, 201, 202, 205, 222, 223, 224, 225, 226, 227, 228, 229, 230, 233 |
| 3D-footprint Homologues: | 6jnm_A, 1tf6_A, 6wmi_A, 5ei9_F, 2i13_A, 1ubd_C, 1mey_C, 4x9j_A, 1g2f_F, 5v3j_F, 6a57_A, 7ysf_A, 6e94_A, 7w1m_H, 8ssq_A, 5yel_A, 7y3l_A, 1tf3_A, 5kl3_A, 2wbs_A, 1llm_D, 5und_A, 7eyi_G, 2jpa_A, 6ml4_A, 8gn3_A, 1f2i_J, 7n5w_A, 6blw_A, 2gli_A, 8h9h_G, 7txc_E, 2drp_D, 3uk3_C, 5k5i_A, 4m9v_C, 5kkq_D, 6u9q_A, 2kmk_A, 5yj3_D, 8cuc_F, 7y3m_I |
| Binding Motifs: | M0524_1.02 kCTTGGCrhk MA0368.1 yGCCAAG |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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