Transcription Factor
| Accessions: | Q8L999 (JASPAR 2024), T22052 (AthalianaCistrome v4_May2016) |
| Names: | AtBPC6, BPC6_ARATH, GAGA-binding transcriptional activator BBR/BPC6, Protein BASIC PENTACYSTEINE6, AT5G42520, BPC6, T22052; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:BBR/BPC |
| Length: | 342 |
| Pfam Domains: | 1-342 GAGA binding protein-like family |
| Sequence: (in bold interface residues) | 1 MDDGGHRENGRHKAAVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERD 60 61 MAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHH 120 121 PHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQT 180 181 AANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIGSKSDWKSQEMVGLNQ 240 241 VVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKM 300 301 SGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK |
| Interface Residues: | 242, 244 |
| 3D-footprint Homologues: | 8in8_C |
| Binding Motifs: | M0151 / MA1402.1 CTCTCTCTCTCTCTCTCTCTm |
| Publications: | Kooiker M., Airoldi C. A., Losa A., Manzotti P. S., Finzi L., Kater M. M., Colombo L. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.. Plant Cell 17:722-729 (2005). [Pubmed] |
| Related annotations: | PaperBLAST |
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