Transcription Factor

Accessions: T001297_1.02 (CISBP 1.02), Q75K84 (JASPAR 2024)
Names: LOC_Os05g41760, T001297_1.02;, cDNA, clone: J080064G22, full insert sequence, Os05g0497200 protein, Q75K84_ORYSJ
Organisms: Oryza sativa, Oryza sativa Japonica Group
Libraries: CISBP 1.02 1, JASPAR 2024 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: experiment type:PBM, family:AP2
Length: 189
Pfam Domains: 22-71 AP2 domain
Sequence:
(in bold interface residues)
1 MELDMGAGGGGGVVGGGRAEAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAAL 60
61 AYDRAAVALRGVKARTNFGSGSSGGGGVGGHGHGHSHAQLPQLHHRMHPPRPPQGPGHFG 120
121 GLDISHPSPWHYVYFPARVQAMAPAAAGHVAAHVAASLPSTTLELRTGPSAGELPFDLNE 180
181 PPPALLFGS
Interface Residues: 27, 29, 30, 31, 35, 37, 39, 44, 46, 48
3D-footprint Homologues: 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D
Binding Motifs: M0043_1.02 CGsCGCCr
MA1034.1 CGsCGCCr
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.