Transcription Factor
| Accessions: | BARX1_DBD (HumanTF 1.0) |
| Names: | BARX1, BARX1_HUMAN |
| Organisms: | Homo sapiens |
| Libraries: | HumanTF 1.0 1 1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] |
| Uniprot: | Q9HBU1 |
| Notes: | Ensembl ID: ENSG00000131668; DNA-binding domain sequence; TF family: homeodomain; Clone source: hDBD_G |
| Length: | 126 |
| Pfam Domains: | 48-104 Homeobox domain |
| Sequence: (in bold interface residues) | 1 GLSSALLAAGPGLPGAAGAPHLPLELHVRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLM 60 61 GLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKG 120 121 RPKKNS |
| Interface Residues: | 46, 48, 49, 50, 51, 89, 90, 92, 93, 96, 97, 100, 101, 104 |
| 3D-footprint Homologues: | 1mnm_C, 1puf_A, 2h1k_B, 6a8r_A, 3cmy_A, 1fjl_B, 3d1n_M, 1ig7_A, 5zfz_A, 1jgg_B, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 6m3d_C, 2ld5_A, 3a01_E, 5hod_A, 1puf_B, 2hdd_A, 7q3o_C, 5jlw_D, 3rkq_B, 2r5y_A, 6es3_K, 1b72_A, 4xrs_G, 2hos_A, 4cyc_A, 2d5v_B, 5flv_I, 1e3o_C, 1au7_A, 1le8_A, 7xrc_C, 2xsd_C, 8g87_X, 5zjt_E, 4qtr_D, 7psx_B, 1k61_B, 4xrm_B, 1o4x_A, 1le8_B, 1du0_A, 3l1p_A |
| Binding Motifs: | BARX1_DBD_1 cvATTAAawavCrATTA BARX1_DBD_2 vcmATTAr |
| Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] |
| Related annotations: | PaperBLAST |
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