Transcription Factor

						

			
Accessions: AtMYB88 (AthaMYB 1.0)

			
Names: AtMYB88
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: F4IRB4
Length: 177
Pfam Domains:     32-76 Myb-like DNA-binding domain
    33-93 Myb-like DNA-binding domain
   82-125 Myb-like DNA-binding domain
   85-133 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MEETTKQNNMKKKKKILLHSDDSKKKERHIVTWSPEEDDILRKQISLQGTENWAIIASKF   60
  61 NDKSTRQCRRRWYTYLNSDFKRGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVK  120
 121 NRFTTLCKKRAKHEAMAKENRIACCVNSDNKRLLFPDGISTPLKAESESPLTKKMR*
Interface Residues: 64, 65, 66, 67, 69, 70, 73, 74, 75, 116, 117, 120, 121, 124, 125, 126
3D-footprint Homologues: 2kdz_A, 1w0t_A, 1vfc_A, 5eyb_B, 6kks_A, 1mse_C, 3osg_A, 3zqc_A, 7xur_A
Binding Motifs: AtMYB88_I wamaGTTr
AtMYB88_II rbTdGTTr
Binding Sites: AAAAGTTA
ACAAGTTA
AGTAGTTA
AGTGGTTA
GCTTGTTG
GTCAGTTA
GTTAGTTG
TACTGTTG
TGCGGTTG
			
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.