Transcription Factor

Accessions: F1NCE0 (JASPAR 2024)
Names: F1NCE0_CHICK
Organisms: Gallus gallus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: F1NCE0
Length: 805
Pfam Domains: 578-615 Tesmin/TSO1-like CXC domain
650-690 Tesmin/TSO1-like CXC domain
Sequence:
(in bold interface residues)
1 MEVVSAEVNSLLPEEIMDTGITLVEDDSIEAVIVSSPMGDSIPMETELEEIVNISSTSDA 60
61 SVTTTATVTAEPVTAPSNHSGDVTANTTTIKTEGNSVVKPAFQSGLHKLGAQTPVTISAN 120
121 QIILNKTTDLKIGNQSIKPDGQKLIVTTLGKTGQPIVLALPRCQLPQAQKTVSQTQGGDS 180
181 KVQGQQIKVVIGGRSEVKPVVGVSALTQGSQLINTAAQPSVLQTQQLKTVQIAKKTRTAT 240
241 SGPVITKLIFAKPINSKAVTGQTTQVSPVIAGRVVSQSTPGTPPKTITISESGVIGSSLS 300
301 TTTQQTPNKIAISPLKSPNKQLTVVSVASQPPNSPQKTVGVPLNVALGQQILTVQQSAPS 360
361 SPGKAIVNHTTTQAVKSAVQAITVGGVGTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLV 420
421 TATTANSSTQSASQNPSTNTQPLQQAKPVVVNATPVRMSVPIVPAQTVKQVVPKPLNPTS 480
481 QIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQS 540
541 SYVSIASNTGFTGTSSIQSQARLPFNGIIPSESANRPRKPCNCTKSLCLKLYCDCFANGE 600
601 FCNNCNCTNCYNNLDHENDRQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRS 660
661 GCLKNYCECYEAKIMCSSICKCVGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSS 720
721 QISDLLTRPTPALSSGGGKLPFTFVTKEVADATCECLLAQAEQAEKMGKSKAAAERMILE 780
781 EFGRCLMRVINSAGKSKSDPCAMNC
Interface Residues: 592, 666
3D-footprint Homologues: 5fd3_A, 4rkh_F
Binding Motifs: MA0619.1 wTTTrAATt
Publications: Schmit F, Cremer S, Gaubatz S. LIN54 is an essential core subunit of the DREAM/LINC complex that binds to the cdc2 promoter in a sequence-specific manner. FEBS J 276:5703-16 (2009). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.