Transcription Factor
Accessions: | F1NCE0 (JASPAR 2024) |
Names: | F1NCE0_CHICK |
Organisms: | Gallus gallus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | F1NCE0 |
Length: | 805 |
Pfam Domains: | 578-615 Tesmin/TSO1-like CXC domain 650-690 Tesmin/TSO1-like CXC domain |
Sequence: (in bold interface residues) | 1 MEVVSAEVNSLLPEEIMDTGITLVEDDSIEAVIVSSPMGDSIPMETELEEIVNISSTSDA 60 61 SVTTTATVTAEPVTAPSNHSGDVTANTTTIKTEGNSVVKPAFQSGLHKLGAQTPVTISAN 120 121 QIILNKTTDLKIGNQSIKPDGQKLIVTTLGKTGQPIVLALPRCQLPQAQKTVSQTQGGDS 180 181 KVQGQQIKVVIGGRSEVKPVVGVSALTQGSQLINTAAQPSVLQTQQLKTVQIAKKTRTAT 240 241 SGPVITKLIFAKPINSKAVTGQTTQVSPVIAGRVVSQSTPGTPPKTITISESGVIGSSLS 300 301 TTTQQTPNKIAISPLKSPNKQLTVVSVASQPPNSPQKTVGVPLNVALGQQILTVQQSAPS 360 361 SPGKAIVNHTTTQAVKSAVQAITVGGVGTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLV 420 421 TATTANSSTQSASQNPSTNTQPLQQAKPVVVNATPVRMSVPIVPAQTVKQVVPKPLNPTS 480 481 QIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQS 540 541 SYVSIASNTGFTGTSSIQSQARLPFNGIIPSESANRPRKPCNCTKSLCLKLYCDCFANGE 600 601 FCNNCNCTNCYNNLDHENDRQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRS 660 661 GCLKNYCECYEAKIMCSSICKCVGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSS 720 721 QISDLLTRPTPALSSGGGKLPFTFVTKEVADATCECLLAQAEQAEKMGKSKAAAERMILE 780 781 EFGRCLMRVINSAGKSKSDPCAMNC |
Interface Residues: | 592, 666 |
3D-footprint Homologues: | 5fd3_A, 4rkh_F |
Binding Motifs: | MA0619.1 wTTTrAATt |
Publications: | Schmit F, Cremer S, Gaubatz S. LIN54 is an essential core subunit of the DREAM/LINC complex that binds to the cdc2 promoter in a sequence-specific manner. FEBS J 276:5703-16 (2009). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.