Transcription Factor
| Accessions: | zen (DrosophilaTF 1.1), P09089 (JASPAR 2024) |
| Names: | Protein zerknuellt 1, ZEN-1, ZEN1_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1, JASPAR 2024 2 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 353 |
| Pfam Domains: | 91-147 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSSVMHYYPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPPNYNQMNSNPTTLNDH 60 61 CSPQHVHQQHVSSDENLPSQPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRR 120 121 IEIAQRLSLCERQVKIWFQNRRMKFKKDIQGHREPKSNAKLAQPQAEQSAHRGIVKRLMS 180 181 YSQDPREGTAAAEKRPMMAVAPVNPKPDYQASQKMKTEASTNNGMCSSADLSEILEHLAQ 240 241 TTAAPQVSTATSSTGTSTNSASSSSSGHYSYNVDLVLQSIKQDLEAAAQAWSKSKSAPIL 300 301 ATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPCVTSYNYPN |
| Interface Residues: | 91, 92, 93, 94, 132, 133, 135, 136, 139, 140, 143, 144, 147 |
| 3D-footprint Homologues: | 3d1n_M, 5zfz_A, 1fjl_B, 6a8r_A, 3cmy_A, 2h1k_B, 1ig7_A, 1puf_A, 1jgg_B, 6m3d_C, 1zq3_P, 3lnq_A, 1nk2_P, 2lkx_A, 2ld5_A, 7q3o_C, 6es3_K, 2hdd_A, 4cyc_A, 2r5y_A, 1puf_B, 5flv_I, 2hos_A, 5zjt_E, 4j19_B, 3a01_E, 7psx_B, 5hod_A, 1b72_A, 5jlw_D, 3rkq_B, 4xrs_G, 1e3o_C, 1le8_A, 8g87_X, 3l1p_A, 4qtr_D, 1du0_A |
| Binding Motifs: | MA0256.1 yTAATKA zen TCAwTTAAmT |
| Binding Sites: | MA0256.1.1 MA0256.1.13 MA0256.1.17 MA0256.1.11 MA0256.1.16 MA0256.1.18 MA0256.1.14 / MA0256.1.7 MA0256.1.10 MA0256.1.15 MA0256.1.3 MA0256.1.12 / MA0256.1.9 MA0256.1.19 MA0256.1.2 MA0256.1.4 MA0256.1.5 MA0256.1.6 MA0256.1.8 |
| Publications: | Hoey T., Levine M. Divergent homeo box proteins recognize similar DNA sequences in Drosophila. Nature 332:858-861 (1988). [Pubmed] Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.