Transcription Factor

Accessions: T075499_1.02 (CISBP 1.02), Q84JQ8 (JASPAR 2024), T02936 (AthalianaCistrome v4_May2016)
Names: AT1G64620, T075499_1.02;, AtDOF1.8, Dof zinc finger protein DOF1.8, DOF18_ARATH, T02936;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF
Length: 352
Pfam Domains: 45-106 Dof domain, zinc finger
Sequence:
(in bold interface residues)
1 MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60
61 FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120
121 KPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGNAHEVKDLNLAFSQGFGIGHN 180
181 HHSSIPEFLQVVPSSSMKNNPLVSTSSSLELLGISSSSASSNSRPAFMSYPNVHDSSVYT 240
241 ASGFGLSYPQFQEFMRPALGFSLDGGDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSST 300
301 NSGGNGNLKENNDEHSDHEHEKEEGEADQSVGFWSGMLSAGASAAASGGSWQ
Interface Residues: 31, 35, 57, 60, 63, 64, 85, 87, 88
3D-footprint Homologues: 6e94_A, 5omv_A
Binding Motifs: M0647_1.02 vawAAaGtdr
MA0981.1 vawAAaGtdr
M0251 sAAAAAGkwaa
M0263 wwaaaamAAAAAGkwaaww
MA0981.2 AAaG
Binding Sites: MA0981.1.14
MA0981.1.1
MA0981.1.10
MA0981.1.11
MA0981.1.12
MA0981.1.13
MA0981.1.15
MA0981.1.16
MA0981.1.17
MA0981.1.18
MA0981.1.19
MA0981.1.2
MA0981.1.20
MA0981.1.3
MA0981.1.4
MA0981.1.5
MA0981.1.6
MA0981.1.7
MA0981.1.8
MA0981.1.9
MA0981.2.1
MA0981.2.10
MA0981.2.11
MA0981.2.12
MA0981.2.13
MA0981.2.14
MA0981.2.15
MA0981.2.16
MA0981.2.17
MA0981.2.18
MA0981.2.19
MA0981.2.2
MA0981.2.20
MA0981.2.3
MA0981.2.4
MA0981.2.5
MA0981.2.6
MA0981.2.7
MA0981.2.8
MA0981.2.9
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.