Transcription Factor
| Accessions: | MYB52 (ArabidopsisPBM 20140210), Q6R0C4 (JASPAR 2024), T04866 (AthalianaCistrome v4_May2016) |
| Names: | ATMYB52, BW52, Myb-related protein 52, MYB52_ARATH, Protein ABA-HYPERSENSITIVE 1, Protein ABA-HYPERSENSTIVE 1, Transcription factor MYB52, AT1G17950, MYB52, T04866; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | MYB (R2R3), ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 249 |
| Pfam Domains: | 5-50 Myb-like DNA-binding domain 8-68 Myb-like DNA-binding domain 57-100 Myb-like DNA-binding domain 60-101 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MMCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPF 60 61 TEEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHD 120 121 GTVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTPIQ 180 181 EGAIDQTKRPMEFYNFLQVNTDSKIHELIDNSRKDEEEDVDQNNRIPNENCVPFFDFLSV 240 241 GNSASQGLC |
| Interface Residues: | 5, 39, 40, 41, 42, 44, 45, 49, 50, 91, 92, 95, 96, 99, 100, 101 |
| 3D-footprint Homologues: | 1w0t_A, 2kdz_A, 5eyb_B, 7xur_A, 6kks_A, 3osg_A, 1mse_C, 3zqc_A |
| Binding Motifs: | MYB52 amcTAACGGw MYB52_2 sGTTAGTTgc M0577 / MA1171.1 ydwwACCGTTA MA1171.2 ACCGTTA |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.