Transcription Factor
Accessions: | O49550 (JASPAR 2024), T18551 (AthalianaCistrome v4_May2016) |
Names: | AtDOF4.5, Dof zinc finger protein DOF4.5, DOF45_ARATH, AT4G21080, DOF4.5, T18551; |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
Length: | 249 |
Pfam Domains: | 24-80 Dof domain, zinc finger |
Sequence: (in bold interface residues) | 1 MDNLNVFANEDNQVNDVKPPPPPPRVCARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWT 60 61 HGGALRNIPIGGSSRAKRARVNQPSVARMVSVETQRGNNQPFSNVQENVHLVGSFGASSS 120 121 SSVGAVGNLFGSLYDIHGGMVTNLHPTRTVRPNHRLAFHDGSFEQDYYDVGSDNLLVNQQ 180 181 VGGYGYHMNPVDQFKWNQSFNNTMNMNYNNDSTSGSSRGSDMNVNHDNKKIRYRNSVIMH 240 241 PCHLEKDGP |
Interface Residues: | 22, 33, 34, 35, 47, 49, 153, 179, 180, 201, 205 |
3D-footprint Homologues: | 6o19_A, 7uy7_A, 7v94_A, 3gx4_X, 2kdz_A |
Binding Motifs: | M0246 / MA1269.1 rawAAAGtwrcTTT M0280 aawAAAGtrrCTTTw MA1269.2 awAAAGtwrcTTT |
Binding Sites: | MA1269.1.1 MA1269.1.10 MA1269.1.11 MA1269.1.12 MA1269.1.13 MA1269.1.14 MA1269.1.15 MA1269.1.16 MA1269.1.17 MA1269.1.18 MA1269.1.19 MA1269.1.2 MA1269.1.20 MA1269.1.3 MA1269.1.4 MA1269.1.5 MA1269.1.6 MA1269.1.7 MA1269.1.8 MA1269.1.9 MA1269.2.1 MA1269.2.10 MA1269.2.11 MA1269.2.12 MA1269.2.13 MA1269.2.14 MA1269.2.15 MA1269.2.16 MA1269.2.17 MA1269.2.18 MA1269.2.19 MA1269.2.2 MA1269.2.20 MA1269.2.3 MA1269.2.4 MA1269.2.5 MA1269.2.6 MA1269.2.7 MA1269.2.8 MA1269.2.9 |
Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.