Transcription Factor
Accessions: | T116752_1.02 (CISBP 1.02), B3H5A8 (JASPAR 2024), T06754 (AthalianaCistrome v4_May2016) |
Names: | EPR1, T116752_1.02;, Early-phytochrome-responsive 1, MYB-related transcription factor EPR1, Protein REVEILLE 7, RVE7_ARATH, AT1G18330, T06754; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
Length: | 372 |
Pfam Domains: | 76-120 Myb-like DNA-binding domain 79-133 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MLCFVRFQAGFVRIIVAARKRFRYFLMAAEDRSEELSSNVENGSCNSNEGINPETSSHWI 60 61 ENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKF 120 121 FSKMAQEADSRSEGSVKAIVIPPPRPKRKPAHPYPRKSPVPYTQSPPPNLSAMEKGTKSP 180 181 TSVLSSFGSEDQVNRCSSPNSCTSDIQSIGATSIDKKNNYTTSKQPFKDDSDIGSTPISS 240 241 ITLFGKIVLVAEESHKPSSYNDDDLKQMTCQENHYSGMLVDTNLSLGVWETFCTGSNAFG 300 301 SVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVA 360 361 SDEKKSQRARIC |
Interface Residues: | 76, 111, 114, 115, 118, 119 |
3D-footprint Homologues: | 6j5b_C, 7d3t_D, 3osg_A, 1mse_C |
Binding Motifs: | M1317_1.02 aGATAtttw M0579 / MA1401.1 rWAAATATCTwa M0582 aawAAATATCT MA1680.1 wawAAATATCTwaw MA1401.2 WAAATATCT |
Binding Sites: | MA1401.1.1 MA1401.1.10 MA1401.1.11 MA1401.1.12 MA1401.1.13 MA1401.1.14 MA1401.1.15 MA1401.1.16 MA1401.1.17 MA1401.1.18 MA1401.1.19 MA1401.1.2 MA1401.1.20 MA1401.1.3 MA1401.1.4 MA1401.1.5 MA1401.1.6 MA1401.1.7 MA1401.1.8 MA1401.1.9 MA1680.1.1 MA1680.1.10 MA1680.1.11 MA1680.1.12 MA1680.1.13 MA1680.1.14 MA1680.1.15 MA1680.1.16 MA1680.1.17 MA1680.1.18 MA1680.1.19 MA1680.1.2 MA1680.1.20 MA1680.1.3 MA1680.1.4 MA1680.1.5 MA1680.1.6 MA1680.1.7 MA1680.1.8 MA1680.1.9 MA1401.2.1 MA1401.2.10 MA1401.2.11 MA1401.2.12 MA1401.2.13 MA1401.2.14 MA1401.2.15 MA1401.2.16 MA1401.2.17 MA1401.2.18 MA1401.2.19 MA1401.2.2 MA1401.2.20 MA1401.2.3 MA1401.2.4 MA1401.2.5 MA1401.2.6 MA1401.2.7 MA1401.2.8 MA1401.2.9 |
Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.