Transcription Factor
| Accessions: | Q8RWX7 (JASPAR 2024), T00458 (AthalianaCistrome v4_May2016) |
| Names: | IDD6_ARATH, At1g14580, T00458; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
| Length: | 467 |
| Sequence: (in bold interface residues) | 1 MSSSYNTIALSSTPTFLLSSAAAGPGPNNFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPG 60 61 NPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRR 120 121 KVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC 180 181 GTKEYRCDCGTIFSRRDSYITHRAFCDALIQESARNPTVSFTAMAAGGGGGARHGFYGGA 240 241 SSALSHNHFGNNPNSGFTPLAAAGYNLNRSSSDKFEDFVPQATNPNPGPTNFLMQCSPNQ 300 301 GLLAQNNQSLMNHHGLISLGDNNNNNHNFFNLAYFQDTKNSDQTGVPSLFTNGADNNGPS 360 361 ALLRGLTSSSSSSVVVNDFGDCDHGNLQGLMNSLAATTDQQGRSPSLFDLHFANNLSMGG 420 421 SDRLTLDFLGVNGGIVSTVNGRGGRSGGPPLDAEMKFSHPNHPYGKA |
| Interface Residues: | 67, 68, 71, 82, 93, 94, 95, 96, 98, 99, 101, 102, 105, 106, 108, 109, 112, 115, 118, 127, 128, 129, 130, 133, 134, 136, 137, 138, 139, 140, 141, 142, 143, 144, 146, 147, 168, 169, 170, 171, 172, 174, 175, 195, 196, 197, 198, 200, 201 |
| 3D-footprint Homologues: | 2i13_A, 8cuc_F, 2kmk_A, 5ei9_F, 2gli_A, 5v3j_F, 6u9q_A, 6blw_A, 5kkq_D, 7ysf_A, 4x9j_A, 1f2i_J, 6wmi_A, 6e94_A, 2jpa_A, 1tf3_A, 1tf6_A, 1g2f_F, 5k5i_A, 1mey_C, 5kl3_A, 6ml4_A, 2lt7_A, 7n5w_A, 8h9h_G, 1ubd_C, 1llm_D, 2drp_D, 7eyi_G, 7txc_E, 2wbs_A |
| Binding Motifs: | M0333 / MA1160.1 wwtwtTTTTGTCgTTTWsYk M0322 mrsWAAAmGACAAAAww MA1160.2 tTTTTGTCgTTTWsYk MA2348.1 tTTTTGTCgTTTWsYk |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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