DNA Binding Site

Accessions: 6p0t_D (3D-footprint 20231221), 6p0u_D (3D-footprint 20231221)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 27
Sequence: AATGTAGTCTGTTAAAAACACAACATT
Type: Heterodimer
Binding TFs: 6p0t_B (Bacterial regulatory protein, Fis family)
6p0u_B (Bacterial regulatory protein, Fis family)
Binding Motifs: 6p0t_ABE TGTnTTnnnnACAGACTAnA
6p0t_B TgTntT
6p0u_ABEF AnnnnTGTGTTnnnnACMGCC
Publications: Hancock SP, Cascio D, Johnson RC. Cooperative DNA binding by proteins through DNA shape complementarity. Nucleic Acids Res 47:8874-8887 (2019). [Pubmed]

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