DNA Binding Site

Accessions: GTTAGTTA (AthaMYB 1.0), GTTAGTTA (UniPROBE 20160601)
Organisms: Arabidopsis thaliana, Mus musculus
Libraries: AthaMYB 1.0 1, UniPROBE 20160601 2
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
2 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: GTTAGTTA
Type: Heterodimer
Binding TFs: UP00222A (Homeobox domain)
AtMYB0 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB100 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB101 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB103 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB105 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB107 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB109 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB110 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB111 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB113 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB115 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB118 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB121 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB124 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB14 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB19 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB22 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB23 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB26 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB27 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB30 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB36 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB41 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB44 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB45 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB46 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB48 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB49 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB5 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB50 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB53 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB55 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB56 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB60 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB61 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB63 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB65 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB66 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB67 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB69 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB70 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB71 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB73 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB77 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB80 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB82 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB86 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB87 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB94 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB95 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB96 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB97 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Binding Motifs: UP00222A_1 dkykGTTAACTAryybt
AtMYB0_II rkTAGTTr
AtMYB100_II / AtMYB109_II / AtMYB115_II / AtMYB105_II GTTAGTTA
AtMYB97_II / AtMYB101_II / AtMYB65_II GTTAGTTr
AtMYB103_II RkTwGKTr
AtMYB107_II rbTdGTTr
AtMYB110_II rkTrGTTA
AtMYB111_II GkTwGkTr
AtMYB113_II RbTdGTTR
AtMYB118_II GTwrGTTA
AtMYB121_II RkTwGKTr
AtMYB124_II / AtMYB56_II RbTWGTTr
AtMYB71_II / AtMYB14_II rkTaGTTr
AtMYB19_II GkTaGkTr
AtMYB22_II GyTwGTTr
AtMYB23_II GYWdGTTr
AtMYB26_II GyTwGTTr
AtMYB48_II / AtMYB27_II rkTrGTTr
AtMYB60_II / AtMYB30_II GdYAGKTR
AtMYB55_II / AtMYB36_II / AtMYB69_II GywdGTTr
AtMYB41_II rbTrGTTA
AtMYB44_II GdtAGTTr
AtMYB45_II GkTAGTTr
AtMYB46_II RKTWGkTr
AtMYB49_II RkTrGTTr
AtMYB50_II / AtMYB86_II GkTwGkTr
AtMYB61_II / AtMYB53_II GkTWGkTR
AtMYB5_II RbWdGTTR
AtMYB63_II GbTwGkTR
AtMYB66_II rkTrGTTA
AtMYB82_II / AtMYB67_II rkTrGTTR
AtMYB70_II GwhrGTTr
AtMYB73_II RdYAGTTr
AtMYB77_II rdtAGTTA
AtMYB80_II GkTwGkTr
AtMYB87_II rkTAGTTA
AtMYB94_II / AtMYB96_II GtTAGTTG
AtMYB95_II RkTdGTTr
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]

Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC and the Bulyk Lab/Brigham and Women’s Hospital do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.