DNA Binding Site
| Accessions: | AAAAAATA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Caenorhabditis elegans, Plasmodium falciparum, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AAAAAATA |
| Type: | Heterodimer |
| Binding TFs: | UP00077A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00272A UP00341A UP00342A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00383A (Helix-loop-helix DNA-binding domain) UP00433A (AP2 domain) UP00606B (Zinc finger, C4 type (two domains)) |
| Binding Motifs: | UP00077A_1 wwCCwwATwwGGwa UP00272A_1 wbkwaaCGCCACCCkaawcs UP00341A_1 ryarwwAWwWWwWTwywawm UP00342A_1 wywrdrAAAAwTTTTyywykg UP00383A_1 wmawgGCACGTGycwwa UP00077A_2 stwwaaAaAAAammtwh UP00433A_1 yygtrwyAGCTAGCTvrckmtg UP00606B_1 wwmrrawtrAttwAtArtwmAAt |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.