DNA Binding Site

Accessions: 1xs9_B (3D-footprint 20231221)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 20
Sequence: GATTTAGCAAAACGTGGCAT
Binding TFs: 1xs9_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
Binding Motifs: 1xs9_A tGCCannnnnTGnnAA
Publications: Dangi B, Gronenborn A.M, Rosner J.L, Martin R.G. Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA. Molecular microbiology 54:45-59 (2004). [Pubmed]

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