DNA Binding Site

Accessions: 2hzv_I (3D-footprint 20231221), 2hzv_K (3D-footprint 20231221)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 30
Sequence: AGTATGACGAATACTTAAAATCGTCATACT
Binding TFs: 2hzv_A / 2hzv_D / 2hzv_H (Ribbon-helix-helix protein, copG family, NikR C terminal nickel binding domain)
Binding Motifs: 2hzv_A TCAta
2hzv_ABCD GTyTGAnnnnnnnnnnnnnnnnTCAwAC
2hzv_EFGH aGTATGAcnnnnnnnnnnnnnnnTCATAC
Publications: Schreiter E.R, Wang S.C, Zamble D.B, Drennan C.L. NikR-operator complex structure and the mechanism of repressor activation by metal ions. Proceedings of the National Academy of Sciences of the United States of America 103:13676-81 (2006). [Pubmed]

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