DNA Binding Site

Accessions: AAAACAAT (UniPROBE 20160601)
Organisms: Mus musculus, Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: AAAACAAT
Type: Heterodimer
Binding TFs: UP00014A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00051A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00064A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00071A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00096A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00101A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00307A (Homeobox domain, Homeobox KN domain)
UP00034A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Motifs: UP00014A_1 mwaAACAATTrAwhw
UP00016A_1 khkwATTATAATrwtm
UP00034A_1 mwtrwwrAACAATarawythyw
UP00051A_1 kkatywATTGTTmwkwa
UP00064A_1 twyhATTGTTbtmamw
UP00071A_1 hwtwATTATAATwdwk
UP00096A_1 wtwrgAACAATwwwtw
UP00101A_1 twATTGTTcthawh
UP00307A_1 htdtwrAACAATAGwmytmc
UP00014A_2 gwycacATTCAtryrat
UP00016A_2 yydmdraACAATrrryg
UP00034A_2 gtsswaATTrwstgwgkrcksy
UP00051A_2 acATTCAtgamass
UP00064A_2 gkrsyraATtyrwdhm
UP00101A_2 mmwyasACAAAGrawt
UP00096A_2 rtrytGGgtGGGwawwt
UP00071A_2 vvycwATTGTtcckhkr
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.