DNA Binding Motif
| Accessions: | MA1274.1 (JASPAR 2024), M0256 (AthalianaCistrome v4_May2016) |
| Names: | DOF3.6, OBP3, OBP3.DAP, T16682; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 21 |
| Consensus: | tTtwCTTTTtyyytTTttttt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 57 103 91 349 t 02 60 103 2 435 T 03 131 92 42 335 t 04 293 67 72 168 w 05 1 555 2 42 C 06 1 23 0 576 T 07 0 12 0 588 T 08 1 1 0 598 T 09 86 21 2 491 T 10 72 101 35 392 t 11 137 155 85 223 y 12 147 150 32 271 y 13 63 162 53 322 y 14 62 98 35 405 t 15 62 86 4 448 T 16 63 125 1 411 T 17 98 59 52 391 t 18 79 124 61 336 t 19 64 110 66 360 t 20 115 104 44 337 t 21 122 84 60 334 t |
| Type: | Heterodimer |
| Binding TFs: | Q9M2U1 (Dof domain, zinc finger) T16682 (Dof domain, zinc finger) Q9M2U1 |
| Binding Sites: | MA1274.1.1 MA1274.1.10 MA1274.1.11 MA1274.1.12 MA1274.1.13 MA1274.1.14 MA1274.1.15 MA1274.1.16 MA1274.1.17 MA1274.1.18 MA1274.1.19 MA1274.1.2 MA1274.1.20 MA1274.1.3 MA1274.1.4 MA1274.1.5 MA1274.1.6 MA1274.1.7 MA1274.1.8 MA1274.1.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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