DNA Binding Motif

Accessions: 1mjq_GHIJ (3D-footprint 20231221)
Names: METHIONINE REPRESSOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE
Length: 16
Consensus: AGnTATCYwGAtAwCT
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 0 0 96 0 G
03 24 24 24 24 n
04 0 5 1 90 T
05 69 3 5 19 A
06 0 0 0 96 T
07 0 96 0 0 C
08 0 28 1 67 Y
09 56 3 1 36 w
10 0 0 96 0 G
11 96 0 0 0 A
12 17 1 13 65 t
13 92 0 3 1 A
14 56 5 5 30 w
15 0 96 0 0 C
16 3 5 3 85 T
Binding TFs: 1mjq_G / 1mjq_H / 1mjq_I / 1mjq_J (Met Apo-repressor, MetJ)
Binding Sites: 1mjq_K / 1mjq_L
Publications: Garvie C.W, Phillips S.E. Direct and indirect readout in mutant Met repressor-operator complexes. Structure (London, England : 1993) 8:905-14 (2000). [Pubmed]

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