DNA Binding Motif

Accessions: 5ed4_A (3D-footprint 20231221)
Names: Response regulator
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of a PhoP-DNA complex
Length: 8
Consensus: AGCTGTGA
Weblogo:
PSSM: P0 A C G T
01 75 7 7 7 A
02 7 7 75 7 G
03 0 96 0 0 C
04 0 0 0 96 T
05 0 0 96 0 G
06 9 7 7 73 T
07 0 0 96 0 G
08 75 7 7 7 A
Binding TFs: 5ed4_A (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: 5ed4_C
5ed4_D
Publications: He X, Wang L, Wang S. Structural basis of DNA sequence recognition by the response regulator PhoP in Mycobacterium tuberculosis. Sci Rep : (2016). [Pubmed]

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