DNA Binding Motif

						

			
Accessions: 1d5y_AB (3D-footprint 20231221)

			
Names: ROB TRANSCRIPTION FACTOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA
Length: 6
Consensus: caGCAc
Weblogo: 
PSSM: P0      A      C      G      T
01     14     52     16     14      c
02     34     20     22     20      a
03      6      6     78      6      G
04      0     96      0      0      C
05     74      8      7      7      A
06     14     52     14     16      c
Binding TFs: 1d5y_A / 1d5y_B (Bacterial regulatory helix-turn-helix proteins, AraC family, GyrI-like small molecule binding domain, Helix-turn-helix domain)
Binding Sites: 1d5y_M
1d5y_N
			
Publications: Kwon HJ., Bennik MH., Demple B., Ellenberger T. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Nat Struct Biol. 7(5):424-30 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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