DNA Binding Motif

						

			
Accessions: MA1059.1 (JASPAR 2024)

			
Names: SPL5
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 9
Consensus: ktGTACGgh
Weblogo: 
PSSM: P0      A      C      G      T
01    185    172    290    354      k
02    234    195    229    342      t
03    142     53    739     66      G
04     22     37     15    927      T
05    926     67      6      0      A
06     10    974      0     15      C
07     84     60    778     79      G
08    178     59    575    188      g
09    250    299    155    296      h
Type: Heterodimer
Binding TFs: Q9S758 (SBP domain)
Q9S758
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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