DNA Binding Motif

						

			
Accessions: 3nm9_DGJ (3D-footprint 20231221)

			
Names: High mobility group protein D
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HMGD(M13A)-DNA complex
Length: 14
Consensus: CGnnngATannnCG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0      0     96      0      G
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     14      3     61     18      g
07     84      3      3      6      A
08      3      3      3     87      T
09     51     11     18     16      a
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      6     84      3      3      C
14      0      0     96      0      G
Binding TFs: 3nm9_D / 3nm9_G / 3nm9_J (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 3nm9_H
3nm9_I
			
Publications: Churchill M.E, Klass J, Zoetewey D.L. Structural analysis of HMGD-DNA complexes reveals influence of intercalation on sequence selectivity and DNA bending. Journal of molecular biology 403:88-102 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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