DNA Binding Motif

						

			
Accessions: MA0554.1 (JASPAR 2024)

			
Names: SOC1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 15
Consensus: wyTTTCYwTTTTTGG
Weblogo: 
PSSM: P0      A      C      G      T
01    288    123     99    378      w
02    172    264    113    339      y
03     65     27     34    762      T
04     62      0     51    775      T
05    117     47     89    635      T
06     20    855     13      0      C
07      0    617      9    262      Y
08    459     37     56    336      w
09    137     78      0    673      T
10    130      6      0    752      T
11     22      8      0    858      T
12     98     24      0    766      T
13     90     71     86    641      T
14    181     10    683     14      G
15     17     23    665    183      G
Type: Heterodimer
Binding TFs: O64645 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
O64645
Binding Sites: MA0554.1.1 / MA0554.1.11 / MA0554.1.6
MA0554.1.10 / MA0554.1.14 / MA0554.1.2 / MA0554.1.5 / MA0554.1.8
MA0554.1.12
MA0554.1.13
MA0554.1.15 / MA0554.1.3
MA0554.1.16
MA0554.1.17
MA0554.1.18
MA0554.1.19
MA0554.1.20
MA0554.1.4 / MA0554.1.7
MA0554.1.9
			
Publications: Riechmann J. L., Wang M., Meyerowitz E. M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res. 24:3134-3141 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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