DNA Binding Motif

Accessions: MA0554.1 (JASPAR 2018)
Names: SOC1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-chip
Length: 15
Consensus: wyTTTCYwTTTTTGG
Weblogo:
PSSM: P0 A C G T
01 288 123 99 378 w
02 172 264 113 339 y
03 65 27 34 762 T
04 62 0 51 775 T
05 117 47 89 635 T
06 20 855 13 0 C
07 0 617 9 262 Y
08 459 37 56 336 w
09 137 78 0 673 T
10 130 6 0 752 T
11 22 8 0 858 T
12 98 24 0 766 T
13 90 71 86 641 T
14 181 10 683 14 G
15 17 23 665 183 G
Binding TFs: O64645 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0554.1.6 / MA0554.1.11 / MA0554.1.1
MA0554.1.8 / MA0554.1.2 / MA0554.1.5 / MA0554.1.10 / MA0554.1.14
MA0554.1.12
MA0554.1.13
MA0554.1.3 / MA0554.1.15
MA0554.1.16
MA0554.1.17
MA0554.1.18
MA0554.1.19
MA0554.1.20
MA0554.1.7 / MA0554.1.4
MA0554.1.9
Publications: Riechmann J. L., Wang M., Meyerowitz E. M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res. 24:3134-3141 (1996). [Pubmed]

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