DNA Binding Motif

						

			
Accessions: CN0060.1 (JASPAR 2024)

			
Names: LM60
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 18
Consensus: cwyATGMATATkCATgAr
Weblogo: 
PSSM: P0      A      C      G      T
01     49    138     32     43      c
02     70     30     14    148      w
03     56     73     36     97      y
04    189     25      1     47      A
05      1      0      0    261      T
06     10      0    251      1      G
07    186     76      0      0      M
08    262      0      0      0      A
09      0      0      1    261      T
10    247      0      0     15      A
11      0      0      0    262      T
12      0      0     86    176      k
13      5    248      5      4      C
14    262      0      0      0      A
15     26      1      0    235      T
16     39     40    176      7      g
17    179     12     23     48      A
18     84     19    131     28      r
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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