DNA Binding Motif

Accessions: MA1027.1 (JASPAR 2024)
Names: KAN1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: arwtATtC
Weblogo:
PSSM: P0 A C G T
01 433 129 237 200 a
02 259 213 285 242 r
03 618 16 43 323 w
04 128 192 58 623 t
05 898 14 68 20 A
06 54 87 19 840 T
07 36 147 169 648 t
08 63 876 18 44 C
Type: Heterodimer
Binding TFs: Q93WJ9 (Myb-like DNA-binding domain)
Q93WJ9
Publications: Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA. Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors. Plant Cell 26:246-62 (2014). [Pubmed]

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