DNA Binding Motif

Accessions: 1hw2_AB (3D-footprint 20231221)
Names: FATTY ACID METABOLISM REGULATOR PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI
Length: 10
Consensus: TGGTCCGACC
Weblogo:
PSSM: P0 A C G T
01 5 7 5 79 T
02 0 0 96 0 G
03 0 0 96 0 G
04 7 11 11 67 T
05 11 69 5 11 C
06 0 96 0 0 C
07 1 5 90 0 G
08 67 11 13 5 A
09 0 96 0 0 C
10 0 96 0 0 C
Binding TFs: 1hw2_A / 1hw2_B (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
Binding Sites: 1hw2_D
1hw2_E
Publications: Xu Y., Heath RJ., Li Z., Rock CO., White SW. The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J Biol Chem. 276(20):17373-9 (2001). [Pubmed]

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