DNA Binding Motif

						

			
Accessions: 1p7h_LN (3D-footprint 20231221)

			
Names: Nuclear factor of activated T-cells, cytoplasmic 2
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB element
Length: 13
Consensus: TTCCnAnnnGGGA
Weblogo: 
PSSM: P0      A      C      G      T
01      7      7      9     73      T
02      0      0      0     96      T
03      0     96      0      0      C
04      0     96      0      0      C
05     24     24     24     24      n
06     66      7      9     14      A
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      0      0     96      0      G
11      0      0     96      0      G
12     23      0     73      0      G
13     66     14      7      9      A
Binding TFs: 1p7h_L / 1p7h_N (Rel homology domain (RHD), IPT/TIG domain)
Binding Sites: 1p7h_A
1p7h_B
1p7h_C
1p7h_D
			
Publications: Giffin M.J, Stroud J.C, Bates D.L, von Koenig K.D, Hardin J, Chen L. Structure of NFAT1 bound as a dimer to the HIV-1 LTR kappa B element. Nature structural biology 10:800-6 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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