DNA Binding Motif

Accessions: PF0057.1 (JASPAR 2018)
Names: ACCTGTTG
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: phylogenetic
Length: 8
Consensus: ACCTGTTG
Weblogo:
PSSM: P0 A C G T
01 480 0 0 0 A
02 0 480 0 0 C
03 0 480 0 0 C
04 0 0 0 480 T
05 0 0 480 0 G
06 0 0 0 480 T
07 0 0 0 480 T
08 0 0 480 0 G
Binding Sites: PF0057.1.4 / PF0057.1.16 / PF0057.1.1 / PF0057.1.8 / PF0057.1.2 / PF0057.1.13 / PF0057.1.5 / PF0057.1.17 / PF0057.1.10 / PF0057.1.9 / PF0057.1.20 / PF0057.1.14 / PF0057.1.6 / PF0057.1.18 / PF0057.1.11 / PF0057.1.3 / PF0057.1.15 / PF0057.1.7 / PF0057.1.19 / PF0057.1.12
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

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